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Siavash Vahidi

A key focus of the group is on the protein degradation machinery that helps to maintain proper level of proteins (protein homeostasis) in Mycobacterium tuberculosis, the causative agent of TB, the world's single largest infectious killer that is annually responsible for 1.5 million deaths. The questions we aim to answer are:
1) What is the assembly mechanism of the M. tuberculosis proteasome core particle and its regulatory particles?
2) What is the role of allostery and long-range interactions in the machinery that tags substrates for proteasomal degradation?
3) How are substrates selected for tagging and degradation?
4) What is the molecular basis of antibiotics that operate by disrupting proteasomal protein degradation?

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Clara Cho

The primary goals of our research program include: 1) to determine the fundamental role of methyl nutrients in health outcomes; 2) to determine molecular mechanisms underlying the development of obesity, metabolic syndrome and chronic diseases; and, 3) to contribute to evidence-based strategies that will improve the health of the population.

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Andrea Clark

More than 4 million Canadians have arthritis and the number of people living with arthritis continues to increase year after year. Osteoarthritis involves multiple tissues and often includes cartilage damage, bone sclerosis and synovial inflammation. A pressing need remains for joint localized therapies and interventions that could slow or ideally stop this debilitating disease.
In our research, we use genetic and surgical models of spontaneous osteoarthritis (with old age) and post-traumatic osteoarthritis (following injury). We follow the progression of disease in a joint in order to better understand how proteins such as TRPV4, integrin alpha1beta1 and cilia influence chondrocyte signal transduction and thus the development of osteoarthritis.

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Melanie Wills

My research group focuses on the diagnosis, prognosis and treatment of Lyme disease. I focus on different topics within this research theme, including: 1) the various forms that Borrelia (Lyme bacteria) can adopt and their corresponding role in the expression of the disease; 2) the effects of people and bacteria genetics in the expression of of the disease; 3) the development of new diagnostic tools; and, 4) the interactions that people diagnosed with Lyme disease have with the medical system.

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Terry Van Raay

Many of the signaling pathways that are involved in development are also involved in the onset and progression of disease. As an example, the Wnt signaling pathway is required during many stages of development and in the homeostasis of stem cells in the adult. Perturbation of this pathway in stem cells in the adult often leads to cancer. It is now known that greater than 90% of colorectal cancers are caused by mutations in the Wnt signaling pathway. As this pathway is important for both proper development and disease, I am curious to know how this pathway can turn it self on and off so many times during development and why it fails to turn off in disease. The lab focuses on two negative feedback regulators of Wnt signaling: Nkd1 and Axin2.

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Chris Whitfield

Research in my laboratory is focused on the architecture and assembly of the cell surfaces of pathogenic bacteria. Current areas of emphasis are:
1) Structure and function of multi-enzyme complexes required for the export of capsular polysaccharides through the periplasm and across the outer membrane of Gram-negative bacteria.
2) Structural basis for substrate recognition by ABC transporters involved in the export of bacterial cell-surface polysaccharides.
3) Structure and function studies of prokaryotic glycosyltransferase enzymes.
4) Mechanisms that couple glycan biosynthesis and chain extension to transport pathways.

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Annette Nassuth

My research group investigates biotic and abiotic stress on plants at the cellular and sub-cellular biochemical and molecular levels. The objective is to identify what changes occur in plant cells upon exposure to stress and which of these changes aid the plant to increase its tolerance to the stress.A major focus currently is the investigation of freezing stress tolerance in grapevines. Winters in Ontario can cause substantial damage to the cultivated grapes used in the Wine Industry, whereas wild grapes have no problems. We try to find out what the molecular basis is for this phenomenon. The ultimate goal is to use this knowledge to improve freezing and drought stress tolerance in the cultivated grapes.

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George van der Merwe

We study the transcriptomic and proteomic adaptation of yeasts to changing nutrient environments, as well as their domestication and fermentation to better understand yeast performance and potentially develop strategies and predictions of fermentation efficiencies and flavour compound production during alcoholic fermentations. We also look at yeast diversity and the unique flavour compounds that could expand product diversity in the wine, beer and cider industries.

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Baozhong Meng

The ultimate goal of my research is to understand viruses and viral diseases for the betterment of agriculture. Our research involves a number of important viruses that infect plants, which include Grapevine rupestris stem pitting-associated virus (GRSPaV), a ubiquitous and important pathogen of grapes worldwide. Current research directions include: Processing and subcellular localization of polyproteins; structure and cellular localization of viral replication complexes; evolution and bio-informatics of grapevine viruses; development of virus-induced gene-silencing vectors ; and, development and application of technologies for the diagnosis of grapevine viruses.

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John Vessey

My research focuses on asymmetric RNA localization and localized translational control in animal species. I have also studied asymmetric RNA localization in neural stem cells and their contribution to both cellular differentiation and cortical development across species. Currently, my students and I are investigating various proteins that we think are important for RNA regulation during brain development.

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Marica Bakovic

My background is in molecular and cell biology of lipid metabolism. Currently, my students and I work on the regulation of membrane phospholipids, fatty acids, and methyl-group donors. More specifically, we look at regulation of genes involved in choline transport and phospholipid metabolism; nutrient transporters and kinetics of membrane transport; molecular and cell biology of lipids; the effect of nutrients on protein synthesis and gene expression; and, nutritional genomics (nutrigenomics) of risk factors for cardiovascular disease and insulin resistance.

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Steve Newmaster

My research explores biodiversity from different perspectives and scales. We have develop molecular diagnostic tools for plant identification, including herbal product authentication and certification. Also, we contribute to the Plant Barcode of Life, investigating intra and interspecific variation in plants, and incorporate both Indigenous knowledge and DNA-based approaches to understanding diversity. In addition, I have extensively researched the effects of ecosystem management on community structure. Lastly, I am engaged in the scholarship of teaching and learning and have recently looked at 1) learning objects as mechanisms of engagement, 2) active learning within large first year biology classes, and 3) ancient pedagogies.

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Steve Crawford

My research program spans three themes:
1) Great Lakes Fish Ecology: This includes developmental biology, animal behaviour, fish habitat, effect of exotic species, species-at-risk, fish population and community dynamics, and the response of ecosystems to disturbance.
2) Science in Natural Resource Management: I focus on Indigenous resource management negotiations with Canada, Ontario, as well as Industry and Environmental NGOs.
3) Indigenous-Western Science Knowledge Systems: I critically examine the theoretical and practical basis for engagement between traditional knowledge holders and 'Western' scientists/managers.

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Nicholas Bernier

Our research is focused on identifying and understanding the pathways by which environmental and social stressors are perceived, processed, and transduced into a neuroendocrine response. Several projects are aimed at elucidating how the neuroendocrine system orchestrates the stress response and focused specifically on the physiological functions of the corticotropin-releasing factor (CRF) system. Another major focus of the lab is to investigate the interactions between the neuroendocrine pathways that regulate the stress response and those involved in the regulation of appetite and growth.

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Sally Adamowicz

My work spans five major axes of research:
1) The shape of the Tree of Life, including the relationships amongst species and the factors that influence the shape of this tree.
2) Major transitions in evolution, especially the frequency of transitions, the rate at which reversals occur, and the consequences of such transitions for molecular evolutionary patterns and speciation rates.
3) Evolutionary trends, with a focus on whether there are large-scale patterns in the history of life.
4) The diversity and integrity of freshwater ecosystems, including the diversity, distributions, traits, and origins of species.
5) The diversity of polar life, which I study using DNA barcoding to discover the true extent of arctic species diversity.

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Josef Ackerman

The ecological and evolutionary problems that underlie my research interests include the convergent evolution of morphology, the manner by which organisms have adapted to their physical environment, physical aspects of energy transfer through ecosystems, and physical-biological linkages in aquatic systems. My lab is currently examining the physical ecology of trophic interactions, reproduction (including abiotic pollination and broadcast spawning), physical-biological interactions and larval recruitment, limnological processes involving hypoxia, hydrological processes involving benthic organisms, and sediment/substrate-water interactions.

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Jaideep Mathur

Our lab works on three major areas of plant biology:
1) Cytoskeleton & Cell Morphogenesis: We study the pivotal role played by the cytoskeleton in cell shape development in higher plants.
2) Live Cell Visualization & Organelle Dynamics: We dissect the response hierarchy and localized co-operation between plastids, mitochondria and peroxisomes and also between the actin and microtubule components of the cytoskeleton during differential growth in higher plant cells.
3) Plant Interactions: We document the earliest intracellular responses of plant cells to diverse environmental stimuli.

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Robert Mullen

My research focuses on three main areas of plant cell biology:
1) Characterization of enzymes involved in seed oil biosynthesis.
2) Understanding various aspects of the biogenesis of peroxisomes, including how membrane proteins are targeted to this organelle, and what role the endoplasmic reticulum (ER) serves in the formation of peroxisomes.
3) Identification and characterization of a unique class of integral membrane proteins known as "Tail-Anchored" (TA) proteins.

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Ray Lu

My lab focuses on two main axes of research:
1) Unfolded Protein Response and Human Diseases: We study proteins that play key roles in animal stress responses, specifically the Unfolded Protein Response (UPR), which has been linked to animal development, cell differentiation, as well as a variety of human diseases such as Alzheimer’s, diabetes, cancer and viral infection.
2) Molecular Mechanisms of Aging: We are working to establish planarians as a new aging model to test the hypothesis that longevity requires multiplex resistance to stress. We hope to identify genes or alleles that confer such multiplex stress resistance and/or promote longevity.

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Rod Merrill

My research is in the general area of protein structure and dynamics and is specifically focused on the biochemistry of bacterial toxins involved in disease and consists of the following projects: Membrane structure of the colicin E1 ion channel; data mining and bioinformatics of bacterial virulence factors; optical spectroscopic approaches to study protein structure and dynamics; enzyme reaction mechanism of the bacterial mono-ADP-ribosyltransferase family; inhibition mechanisms and structural complexes of toxins with inhibitors; and, X-ray structures of protein-protein complexes involving toxins.

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Nina Jones

Research in our laboratory is focused on defining eukaryotic signal transduction pathways, and investigating how mutations in components of these pathways can contribute to human disease. Signal transduction is a central process in multicellular organisms that allows for the exchange of informational cues between and within cells. Current areas of research include: 1) Signalling pathways controlling kidney podocyte morphology; 2) focal adhesion dynamics in cancer cells; and, 3) characterization of a novel neuronal adaptor protein, ShcD.

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Shoshanah Jacobs

I conduct research along three axes:
1) Education: Our research program is designed to serve at the leading edge of scholarship in experiential and transdisciplinary education. It is driven by the existing evidence base in pedagogical best practice, in partnership with community need.
2) Biomimetics: Nature is overflowing with inspiring solutions to the world's most wicked problems. We work to understand how knowledge is successfully accessed and how biology is taught to non-specialists.
3) Environmental Ecology: We study mate selection and nest energy dynamics of seabirds and large ocean regime changes though DNA metabarcoding. We are also currently looking at Personal Protective Equipment litter in metropolitan areas.

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Hafiz Maherali

We study the evolution of plant function and its mechanistic links to the ecological functioning of populations, communities and ecosystems. We study how and why plant functional traits evolve, and how these traits influence the outcome of ecological interactions that are known to shape community assembly, such as competition and mutualism. To do this work, we use several approaches, including comparative analyses among populations and species, observations of natural selection in the wild, and experimental studies that manipulate the identity of selective agents experienced by populations. We explore how traits influence community assembly and ecosystem function by carrying out experimental studies in controlled environments and in the field.

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Elizabeth Mandeville

I study evolution in heterogeneous environments, over large geographic ranges, and in the presence of variable species assemblages by using computational approaches and bioinformatics techniques to analyze large, high-resolution genomic datasets. My work revolves around two focal questions: 1) How consistent are evolutionary and ecological outcomes of species interactions? and 2) To what extent are species evolutionarily cohesive across their ranges? Most of the fish species I study are affected by human-mediated disturbances, including species introductions and fragmentation of aquatic habitat by dams. I use large genomic, ecological, and isotopic datasets to understand how evolutionary processes function across ecological contexts.

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